Protein Pilot (v4.5)

Software package for the interpretation and evaluation of mass spectometry-based proteomics data. The Protein Pilot software performs sequence database searches of MS/MS and LC-MS/MS raw data from various MS-platforms. The supported raw data formats are wiff, mgf or MALDI TOF/TOF raw data. Various workflows for protein quantification are available. The Paragon Search Algorithm is of particular interest when searching a large number of protein modifications as the number of allowed modifications to be searched dynamically is unlimited.